Patient Description

Example

Configurations

Submit

Parsing Results

Highlight

Hold keyboard letter 'Q' and use mouse to select the text

Cancel

double click to cancel the highlighted text

Search

click dark green box to search desired HPO terms

N

Negation

click the button 'N' to change the negation status

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HPO Output

This is automated parsing results. Human inspections are required to guarantee the accuracy.

Term	Id	Is_negated	Count

Get Genes

Gene Output

predicted gene is based on searching along the gene-gene interaction network.

Gene	Rank	Score	Status

External Links

Automated EHR-driven gene analysis

By clicking ‘Phenolyzer’, a Phenolyzer-compatible phenotype list will be generated in the clipboard and the users will be directed to Phenolyzer page

Standardized phenotypes collection

You could download the document-level collection of standardized phenotypes

NLP-Assisted Textual Annotation

You could download a standard-off annotation file identifies the start and end position of the text it applies to with concrete standardized HPO concepts recognized. JSON annotations may contained the overlapped and repeated annotations, which have been merged in the annotation interface

JSON

1. Only de-identified notes could be uploaded

2. Doc2Hpo don't take any responsibility for protecting PHI data

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4. If you want to install your internal Doc2Hpo please visit the source

5. Please leave your comment and report bug here

Reject

Accept